TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs
Di Xu, Peiheng Zhang, Yang Zhang, Shunchen Shi, and Xueqi Li. 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2023)
Crescent: A GPU-based Targeted Nanopore Sequence Selector
Tong Li, Xueqi Li (correspondence), Yewen Li, Ruibao Song, Xun Wang (correspondence) IEEE International Conference on Bioinformatics & Biomedicine (BIBM22)
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PIM-Align: A Processing-in-Memory Architecture for FM-index Search Algorithm
Xueqi Li, Guangming Tan, Ninghui SunJournal of Computer Science and Technology (JCST) (IF: 1.506)
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Accelerating FM-index Search for Genomic Data Processing
Yuanrong Wang, Xueqi Li, Dawei Zang, Guangming Tan, Ninghui Sun. The 47th International Conference on Parallel Processing
Accelerating Large-Scale Genomic Analysis with Spark
Xueqi Li, Guangming Tan, Chunming Zhang, Xu Li, Zhonghai Zhang, Ninghui Sun. The IEEE International Conference on Bioinformatics and Biomedicine