TransCaller: An End-to-end Accelerated Transformer-based Nanopore Basecaller on GPUs
Di Xu, Peiheng Zhang, Yang Zhang, Shunchen Shi, and Xueqi Li. 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2023)
Accelerating k-Shape Time Series Clustering Algorithm Using GPU
Xun Wang , Ruibao Song , Junmin Xiao , Tong Li , Xueqi Li (correspondence). Acceptance. Transactions on Parallel and Distributed Systems
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NvWa: Enhancing Sequence Alignment Accelerator Throughput via Hardware Scheduling
Yewen Li, Xueqi Li (correspondence), Ruihao Gao, Wanqi Liu, Guangming Tan. The 29th IEEE International Symposium on High-Performance Computer Architecture (HPCA 2023)
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AlphaSparse: Generating High Performance SpMV Codes Directly from Sparse Matrices
Zhen Du, Jiajia Li, Yinshan Wang, Xueqi Li, Guangming Tan, Ninghui Sun. The International Conference for High Performance Computing, Networking, Storage, and Analysis
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Crescent: A GPU-based Targeted Nanopore Sequence Selector
Tong Li, Xueqi Li (correspondence), Yewen Li, Ruibao Song, Xun Wang (correspondence) IEEE International Conference on Bioinformatics & Biomedicine (BIBM22)
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MetaZip: A High-throughput and Efficient Accelerator for DEFLATE
Ruihao Gao, Xueqi Li (correspondence), Yewen Li, Xun Wang, Guangming Tan The 59th Design Automation Conference (DAC-59)
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PIM-Align: A Processing-in-Memory Architecture for FM-index Search Algorithm
Xueqi Li, Guangming Tan, Ninghui SunJournal of Computer Science and Technology (JCST) (IF: 1.506)
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MEDAL: Scalable DIMM based Near Data Processing Accelerator for DNA Seeding Algorithm
Wenqin Huangfu, Xueqi Li, Shuangchen Li, Xing Hu, Peng Gu, Yuan Xie The 52nd IEEE/ACM International Symposium on Microarchitecture (MICRO-52)
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Efficient System Architecture in the Era of Monolithic 3D: Dynamic Inter-tier Interconnect and Processing-in-Memory
Dylan Stow, Itir Akgun, Wenqin Huangfu, Yuan Xie, Xueqi Li, Gabriel H. Loh The 56th Design Automation Conference (DAC-56)
Accelerating FM-index Search for Genomic Data Processing
Yuanrong Wang, Xueqi Li, Dawei Zang, Guangming Tan, Ninghui Sun. The 47th International Conference on Parallel Processing